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Related Sites

Bioinformatics Related Sites
Genome Browser
NCBI The main bioinformatics database in USA, providing data retrieval systems and computational resources for biological data.
Ensembl A genome databases for vertebrates and other eukaryotic species.
UCSC This site contains the reference sequence and working draft assemblies for a large collection of genomes.
DDBJ DNA Data Bank of Japan is the nucleotide sequence data bank with many kinds of analysis tools.
SNP Information
Affymetrix NetAffix Analysis Center The NetAffx™ Analysis Center enables researchers to correlate their GeneChip® array results with array design and annotation information.
Affyrmation A web-based application, provides online affirmation and annotation for Affymetrix SNP information.
SNPper Retrieve known SNPs by position or by association with a gene; save, filter, analyze, display or export SNP sets; explore known genes using names or chromosome positions.
PCR Primer Design
PrimerZ Streamlined primer design for promoters, exons and human SNPs
PDA An online primer-design tool develped by NHRI
In-Silico PCR In-Silico PCR searches a sequence database with a pair of PCR primers, using an indexing strategy for fast performance.
Bioinfomatic tools and databases
HapMap The International HapMap Project is a partnership of scientists to develop a public resource to describe the common patterns of human DNA sequence variation that will help researchers find genes associated with human disease and response to pharmaceuticals.
GenePipe A high performance bioinformatics pipeline for large-scale human genomic variation studies supported by IBMS, Academia Sinica. There are a number of sub-projects which include: Affyrmation, SeqU, QCeq, Genominer, fastSNP, and PrimerZ.
String A database of known and predicted protein interactions.The interactions include direct (physical) and indirect (functional) associations.
MGI The international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease.
KEGG pathway database A integrated database resource consisting of 16 main databases, broadly categorized into systems information, genomic information, and chemical informationand, also the associated bioinformatics technologies are being developed both for basic research and practical applications.
Nucleotide databases and analysis tools Protein databases and analysis tools Other databases and analysis tools
GenBank dbEST MMDB SMAR Taxonomy
Genomes dbSTS ExPASy Blocks PopSet
UniGene AceDB SWISS-PROT & TrEMBL FlyBase Pathway