{"id":2242,"date":"2020-04-13T09:08:15","date_gmt":"2020-04-13T01:08:15","guid":{"rendered":"https:\/\/lsl.sinica.edu.tw\/Blog\/?p=2242"},"modified":"2020-04-13T09:08:15","modified_gmt":"2020-04-13T01:08:15","slug":"20200413","status":"publish","type":"post","link":"https:\/\/lsl.sinica.edu.tw\/Blog\/2020\/04\/20200413\/","title":{"rendered":"BioCyc \u7684\u5de5\u5177\uff1aOmic Data Analysis"},"content":{"rendered":"<p><a href=\"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-content\/uploads\/2020\/04\/ChatRoom20200413.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"aligncenter wp-image-2250 size-full\" src=\"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-content\/uploads\/2020\/04\/ChatRoom20200413.jpg\" alt=\"ChatRoom20200413\" width=\"848\" height=\"1000\" \/><\/a><\/p>\n<p><!--more--><\/p>\n<p>&nbsp;<\/p>\n<h3 style=\"font-weight: normal; color: #2f2f2f;\"><strong><span style=\"font-style: inherit; color: #339966;\">\u6587\uff0f\u5f90\u552f\u54f2\u535a\u58eb<\/span><\/strong><\/h3>\n<h3><\/h3>\n<h3 style=\"text-align: justify;\">\u4eca\u5929\u70ba\u5927\u5bb6\u4ecb\u7d39BioCyc\u7684\u4e00\u500b\u5de5\u5177\uff1a Omic Data Analysis\u3002\u5982\u679c\u6709\u4e00\u500bNGS\u6216microarray\u7684\u5be6\u9a57\u7d50\u679c\uff0c\u60f3\u8981\u770b\u770b\u4e0d\u540c\u6a23\u672c\u6216\u4e0d\u540c\u6642\u9593\u9ede\u4e0b\uff0c\u57fa\u56e0\u8868\u73fe\u503c\u7684\u8b8a\u5316\u662f\u5426\u53c3\u8207\u4e86\u90a3\u4e9b\u529f\u80fd\uff0cOmic Data Analysis\u53ef\u4ee5\u5e6b\u52a9\u4f60\u627e\u5230\u6709\u5dee\u7570\u8868\u73fe\u7684\u4ee3\u8b1d\u9014\u5f91\u5594\uff01<\/h3>\n<h3><\/h3>\n<h3 style=\"text-align: justify;\">\u9996\u5148\u9023\u7d50\u5230Biocyc\u9996\u9801\uff0c\u5728\u7db2\u9801\u7684\u53f3\u4e0a\u89d2\u78ba\u5b9a\u597d\u8981\u5206\u6790\u7684\u7269\u7a2e\u5f8c\uff0c\u5f9e\u5de5\u5177\u5217\u9ede\u9078Metabolism -&gt; Cellular Overview\uff0c\u6216\u76f4\u63a5\u9ede\u9078<a href=\"https:\/\/biocyc.org\/overviewsWeb\/celOv.shtml\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/biocyc.org\/overviewsWeb\/celOv.shtml<\/a>\u3002<\/h3>\n<h3 style=\"text-align: justify;\">\u5728\u53f3\u65b9\u201dOPERATIONS\u201d\u9ede\u9078\u201dUpload Data File\u201d\u5f8c\uff0c\u4f9d\u7167\u5716\u7247\u6307\u793a\u5c07\u6a94\u6848\u4e0a\u50b3\uff0c\u6a94\u6848\u70batab\u5206\u9694\u7684\u7d14\u6587\u5b57\u6a94\uff0c\u7b2c\u4e00\u500b\u6b04\u4f4d(\u6b04\u4f4d0)\u5fc5\u9808\u662f\u57fa\u56e0\u540d\u7a31\u6216ID\uff0c\u4e4b\u5f8c\u624d\u662f\u6a23\u672c\u7684\u6b04\u4f4d\u3002<\/h3>\n<p><a href=\"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-content\/uploads\/2020\/04\/20200413b002.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"size-full wp-image-2243 aligncenter\" src=\"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-content\/uploads\/2020\/04\/20200413b002.jpg\" alt=\"20200413b002\" width=\"992\" height=\"550\" \/><\/a><\/p>\n<h3>Biocyc\u6709\u63d0\u4f9b\u7bc4\u4f8b\u53ef\u4ee5\u4e0b\u8f09\uff0c\u4ee5\u9019\u500b\u7bc4\u4f8b\u70ba\u4f8b\uff0c\u5171\u6709\u516d\u500b\u6a23\u672c\u3002\u8f38\u5165\u5f8c\u7b49\u5f85\u4e00\u4e0b\uff0c\u6703\u51fa\u73fe\u5169\u500b\u65b0\u9801\u9762\uff1a<\/h3>\n<h3><a href=\"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-content\/uploads\/2020\/04\/20200413b003.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-2244 aligncenter\" src=\"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-content\/uploads\/2020\/04\/20200413b003.jpg\" alt=\"20200413b003\" width=\"971\" height=\"568\" \/><\/a><\/h3>\n<p>&nbsp;<\/p>\n<h3 style=\"text-align: justify;\">\u9019\u500b\u7d50\u679c\u544a\u8a34\u4f60\u90a3\u4e9b\u4ee3\u8b1d\u9014\u5f91\u5728\u4e0d\u540c\u7684\u6a23\u672c\u6709\u5f88\u5927\u7684\u57fa\u56e0\u8868\u73fe\u5dee\u7570\uff0cDifferential Pathway Perturbation Score (DPPS)\u503c\u8d8a\u9ad8\u8868\u793a\u6a23\u672c\u9593\u5dee\u7570\u8d8a\u5927\u3002\u4e5f\u53ef\u4ee5\u5f9ePathway Perturbation Score (PPS)\u770b\u51fa\u8a72\u4ee3\u8b1d\u9014\u5f91\u5728\u6a23\u672c\u9593\u7684\u8868\u73fe\u5dee\u7570\u3002<\/h3>\n<h3><\/h3>\n<h3 style=\"text-align: justify;\">\u53e6\u5916\u4e5f\u53ef\u4ee5\u5728\u201dCellular Overview\u201d\u9019\u500b\u9801\u9762\u4e2d\u770b\u5230heatmap\u7d50\u679c\uff0c\u9ede\u9078\u7279\u5b9a\u7684\u4ee3\u8b1d\u9014\u5f91\uff1b\u9084\u53ef\u4ee5\u7522\u751f\u7d71\u8a08\u76f4\u65b9\u5716\u4f86\u6bd4\u8f03\u6a23\u672c\u4e4b\u9593\u7684\u8868\u73fe\u91cf\uff0c\u9084\u6709\u8a73\u7d30\u8aaa\u660e\uff0c\u662f\u500b\u5341\u5206\u597d\u7528\u7684\u5de5\u5177\u3002<\/h3>\n<h3><a href=\"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-content\/uploads\/2020\/04\/20200413b004.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\" wp-image-2245 aligncenter\" src=\"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-content\/uploads\/2020\/04\/20200413b004.jpg\" alt=\"20200413b004\" width=\"924\" height=\"552\" \/><\/a><\/h3>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<div class=\"pld-like-dislike-wrap pld-template-1\">\r\n    <div class=\"pld-like-wrap  pld-common-wrap\">\r\n    <a href=\"javascript:void(0)\" class=\"pld-like-trigger pld-like-dislike-trigger  \" title=\"\u8b9a\" data-post-id=\"2242\" data-trigger-type=\"like\" data-restriction=\"ip\" data-already-liked=\"0\">\r\n                        <i class=\"fas fa-thumbs-up\"><\/i>\r\n                <\/a>\r\n    <span class=\"pld-like-count-wrap pld-count-wrap\">0    <\/span>\r\n<\/div><\/div>","protected":false},"excerpt":{"rendered":"<p>0<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[18,8],"tags":[79,16,89],"class_list":["post-2242","post","type-post","status-publish","format-standard","hentry","category-bioinformatics","category-databases","tag-biocyc","tag-dr-a-cula-lab","tag-omic-data-analysis"],"_links":{"self":[{"href":"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-json\/wp\/v2\/posts\/2242","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-json\/wp\/v2\/comments?post=2242"}],"version-history":[{"count":5,"href":"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-json\/wp\/v2\/posts\/2242\/revisions"}],"predecessor-version":[{"id":2251,"href":"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-json\/wp\/v2\/posts\/2242\/revisions\/2251"}],"wp:attachment":[{"href":"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-json\/wp\/v2\/media?parent=2242"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-json\/wp\/v2\/categories?post=2242"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/lsl.sinica.edu.tw\/Blog\/wp-json\/wp\/v2\/tags?post=2242"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}