Academia Sinica Life Science Library -- Publications

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Publications

Inst. of Plant and Microbial Biology - 吳素幸 Wu, Shu-Hsing

Journal 42

Huang CF, Liu WY, Yu CP, (Wu SH), Ku MSB* and Li WH*. C4 leaf development and evolution. CURRENT OPINION IN PLANT BIOLOGY. 76, 102454, 2023-12. [JCR]　[WOS]
Wu HW, Fajiculay E, Wu JF, Yan CCS, Hsu CP*, (Wu SH*). Noise reduction by upstream open reading frames. Nature Plants. 8(5), 474-480, 2022-05. [JCR]　[WOS]
Huang CK, Lin WD, (Wu SH*). An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development. Genome Biology. 23(1), 50, 2022-02. [JCR]　[WOS]
Chen HH, Yu HI, Rudy R, Lim SL, Chen YF, (Wu SH), Lin SC, Yang MH, Tarn WY*. DDX3 modulates the tumor microenvironment via its role in endoplasmic reticulum-associated translation. iScience. 24(9), 103086, 2021. [JCR]　[WOS]
Sanobar N, Lin PC, Pan ZJ, Fang RY, Tjita V, Chen FF, Wang HC, Tsai HL, (Wu SH), Shen TL, Chen YH, Lin SS*. Investigating the Viral Suppressor HC-Pro Inhibiting Small RNA Methylation through Functional Comparison of HEN1 in Angiosperm and Bryophyte. Viruses. 13(9), 1837, 2021. [JCR]　[WOS]
Ignasius J, Yan CC S, Chu JW, (Wu SH), Hsu CP*. Basal leakage in oscillation: Coupled transcriptional and translational control using feed-forward loops. PLOS Computational Biology. 16(9), e1007740, 2020-09. [JCR]　[WOS]
Jang GJ, Jang JC, (Wu SH*). Dynamics and functions of stress granules and processing bodies in plants. Plants. 9(9),1122, 2020-09. [JCR]　[WOS]
Liu WY, Lin HH, Yu CP, Chang CK, Chen HJ, Lin JJ, Lu MY, Tu, SL, Shiu, SH, (Wu SH*), Ku MSB* and Li WH*. Maize ANT1 modulates vascular development, chloroplast development, photosynthesis and plant growth. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 117(35),21747-21756, 2020-09. [JCR]　[WOS]
Yu X, Li B, Jang GJ, Jiang S. Jiang D, Jang JC, (Wu SH), Shan L and He P*. Orchestration of processing body dynamics and mRNA decay in Arabidopsis immunity. Cell Reports. 28(8), 2194-2205, 2019-08. [JCR]　[WOS]
Jang GJ, Yang JY, Hsieh HL and (Wu SH*). Processing bodies control the selective translation for optimal development of Arabidopsis young seedlings. Proceedings of the National Academy of Sciences of the United States of America. 116(13), 6451-6456, 2019-03. [JCR]　[WOS]
Chang YM, Lin HH, Liu WY, YU CP, Chen HJ, Wartini PP, Kao YY, Wu YH, Lin JJ, Lu MY, Yu SL, (Wu SH), Shiu SH, Ku MSB and Li WH*. Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes. Proceedings of the National Academy of Sciences of the United States of America. 116(8), 3091-3099, 2019-02. [JCR]　[WOS]
Joanito I, Chu JW, (Wu SH), Hsu CP*. An incoherent feed-forward loop switches the Arabidopsis clock rapidly between two hysteretic states. Scientific Reports. 8, 13944, 2018. [JCR]　[WOS]
Chen GH, Liu MJ, Xiong Y, Sheen J, (Wu SH*). TOR and RPS6 transmit light signals to enhance protein translation in deetiolating Arabidopsis seedlings. Proceedings of the National Academy of Sciences of the United States of America. 115(50), 12823-12828, 2018. [JCR]　[WOS]
Huang WY, Wu YC, Pu HY, Wang Y, Jang GJ, (Wu SH*). Plant dual-specificity tyrosine phosphorylation-regulated kinase optimizes light-regulated growth and development in Arabidopsis. Plant, Cell & Environment. 40(9),1735-1747, 2017-09. [JCR]　[WOS]
Huang CF, Yu CP, Wu YH, Lu MJ, Tu SL, (Wu SH), Shiu SH, Ku MSB and Li WH*. Elevated auxin biosynthesis and transport underlie high vein density in C4 leaves. Proceedings of the National Academy of Sciences of the United States of America. 114(33), E6884-E6891, 2017-08. [JCR]　[WOS]
Lin MC, Tsai HL, Lim SL, Jeng ST and (Wu SH*). Unraveling multifaceted contributions of small regulatory RNAs to photomorphogenic development in Arabidopsis. BMC Genomics. 18(1), 559, 2017-07. [JCR]　[WOS]
Li C, Sako Y, Imai A, Nishiyama T, Thompson K, Kubo M, Hiwatashi Y, Kabeya Y, Karlson D, (Wu SH), Ishikawa M, Murata T, Benfey PN, Sato Y, Tamada Y, Hasebe M*. A Lin28 homologue reprograms differentiated cells to stem cells in the moss Physcomitrella patens. Nature Communications. 8, 14242, 2017-01. [JCR]　[WOS]
Wu J.-F., Tsai H.-L., Joanito I., Wu Y.-C., Chang C.-W., Li Y.-H., Wang Y., Hong J. C., Chu J.-W., Hsu C.-P., and Wu S.-H.*. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nature Communications. 7, 13181, 2016-10. [JCR]　[WOS]
Huang C.-F., Chang Y.-M., Lin J.-J., Yu C.-P., Lin H.-H., Liu W.-Y., Yeh S., Tu S.-L., Wu S.-H., Ku M. S.-B.*, and Li W.-H.* . Insights into the regulation of C4 leaf development from comparative transcriptomic analysis. CURRENT OPINION IN PLANT BIOLOGY. 30, 1-10, 2016-04. [JCR]　[WOS]
Lee W.-C., Lu S.-H., Lu M.-H., Yang C.-J., Wu S.-H., Chen H.-M*. Asymmetric bulges and mismatches determine 20-nucleotide microRNA formation in plants. RNA Biology. 12, 1054-1066, 2015-09. [JCR]　[WOS]
Yu C.-P., Chen S. C.-C., Chang Y.-M., Liu W.-Y., Lin H.-H., Lin J.-J., Chen H.-J., Lu Y.-J., Wu Y.-H., Lu M.-Y. J., Lu C.-H., Shih A. C.-C., Ku M. S.-B., Shiu S.-H.*, Wu S.-H.*, Li W.-H.*. Transcriptome dynamics of developing maize leaves and genome-wide prediction of cis elements and their cognate transcription factors. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 112, E2477-E2486, 2015-05. [JCR]　[WOS]
Tsai H.-L., Li Y.-H., Hsieh W.-P., Lin M.-C., Ahn J. H., Wu S.-H.*. HUA ENHANCER 1 is involved in post-transcriptional regulation of positive and negative regulators in Arabidopsis photomorphogenesis. PLANT CELL. 26(7), 2858-2872, 2014-07. [JCR]　[WOS]
Wu H.-Y., Liu K.-H., Wang Y.-C., Wu J.-F., Chiu W.-L., Chen C.-Y., Wu S.-H., Sheen J., Lai E.-M.*. AGROBEST: an efficient Agrobacterium-mediated transient expression method for versatile gene function analyses in Arabidopsis seedlings. . Plant Methods. 10, 19, 2014-06. [JCR]　[WOS]
Wu, S.-H.*. Gene expression regulation in photomorphogenesis: from the perspective of central dogma. ANNUAL REVIEW OF PLANT BIOLOGY. 65, 311-333, 2014-04. [JCR]　[WOS]
Liu M.-J., Wu S.-H., Wu J.-F., Lin W.-D., Wu Y.-C., Tsai T.-Y, Tsai H.-L., Wu S.-H.*. Translational landscape of photomorphogenic Arabidopsis. PLANT CELL. 25(10), 3699-3710, 2013-11. [JCR]　[WOS]
Chen CE, Yeh KC, (Wu SH), Wang HI, Yeh HH*. A vicilin-like seed storage protein, PAP85, is involved in tobacco mosaic virus replication. JOURNAL OF VIROLOGY. 87(12), 6888-6900, 2013-06. [JCR]　[WOS]
Chen YY, Wang Y, Shin LJ, Wu JF, Shanmugam V, Tsednee M, Lo JC, Chen CC, (Wu SH), Yeh KC.*. Iron is involved in the maintenance of circadian period length in Arabidopsis. PLANT PHYSIOLOGY. 161(3), 1409-1420, 2013-03. [JCR]　[WOS]
Hsieh W.-P., Hsieh H.-L. and Wu S.-H.*. Arabidopsis bZIP16 transcription factor integrates light and hormone signaling pathways to regulate early seedling development. . PLANT CELL. 24(10), 3997-4011, 2012-10. [JCR]　[WOS]
Liu M.-J., Wu S.-H., Chen H.-M. and Wu S.-H.*. Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis. MOLECULAR SYSTEMS BIOLOGY. 8, 566, 2012-01. [JCR]　[WOS]
Chang C.-S., Maloof J.N., Wu S.-H.*. COP1-mediated degradation of BBX22/LZF1 optimizes seedling development in Arabidopsis. PLANT PHYSIOLOGY. 156(1), 228-39, 2011-03. [JCR]　[WOS]
Wang. Y., Wu J.-F., Nakamichi N., Sakakibara H., Nam H.-G., Wu S.-H.* . LIGHT-REGULATED WD1 and PSEUDO-RESPONSE REGULATOR9 form a positive feedback regulatory loop in the Arabidopsis circadian clock. PLANT CELL. 23, 486–498, 2011-02. [JCR]　[WOS]
Chen H.-M., Chen L.-T., Patel K., Li Y.-H., Baulcombe, D. and Wu S.-H.*. 22-nucleotide RNA triggers secondary siRNA biogenesis in plants. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 107(34), 15269-15274, 2010-07. [JCR]　[WOS]
Emerson J.J., Hsieh L.-C., Sung H.-M., Wang T.-Y., Huang C.-J., Lu H.-H., Lu M.-Y., Wu S.-H., Li W.-H. Natural selection on cis and trans regulation in yeasts. GENOME RESEARCH. 20, 826-836, 2010. [JCR]　[WOS]
Khanna R., Kronmiller B, Maszle D. R., Coupland G., Holm M., Mizuno T., and Wu S.-H. The Arabidopsis B-Box Zinc Finger Family . PLANT CELL. 21(11), 3416-3420, 2009-11. [JCR]　[WOS]
Chen H.-M. and Wu S.-H.*. Mining small RNA sequencing data: a new approach to identify small nucleolar RNAs in Arabidopsis. NUCLEIC ACIDS RESEARCH. 37(9), e69, 2009-04. [JCR]　[WOS]
C. S. Chang, Y. H. Li, L. T. Chen, W. C. Chen, W. P. Hsieh, J. Shin, W. N. Jane, S. J. Chou, G. Choi, J. M. Hu, S. Somerville and S. H. Wu. LZF1, a HY5-regulated transcriptional factor, functions in Arabidopsis de-etiolation. PLANT JOURNAL. 54, 205-219, 2008. [JCR]　[WOS]
J. F. Wu, Y. Wang and S. H. Wu. Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering. PLANT PHYSIOLOGY. 148, 948-959, 2008. [JCR]　[WOS]
Chen, H-M, Li, Y-H and Wu, S-H. Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in Arabidopsis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 104(9), 3318-3323, 2007. [JCR]　[WOS]
P. F. Liu, W. C. Chang, Y. K. Wang, S. B. Munisamy, S. H. Hsu, H. Y. Chang, S. H. Wu and R. L. Pan. Differential regulation of Ku gene expression in etiolated mung bean hypocotyls by auxins. BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION. 1769, 443-454, 2007. [JCR]　[WOS]
V. Buchanan-Wollaston, T. Page, E. Harrison, E. Breeze, P. O. Lim, H. G. Nam , J.F. Lin, S.H. Wu, J. Swidzinski, K. Ishizaki and C. Leaver. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation induced senescence in Arabidopsis. Plant Journal. 42, 567-585, 2005. [JCR]　[WOS]
C. P. Lai, C. L. Lee, P. H. Chen, S. H. Wu, C. C. Yang and J. F. Shaw. Molecular analyses of the Arabidopsis TUBBY-like protein gene family. Plant Physiol. 134, 1586-1597, 2004. [JCR]　[WOS]
J. F. Lin, S. H. Wu. Molecular events in senescing Arabidopsis leaves. Plant J. 39, 612-628, 2004. [JCR]　[WOS]

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