Publications
Journal 20
- Ying-Lan Chen*, Jo-Wei Allison Hsieh, Shang-Che Kuo, Chung-Ting Kao, Chia-Chun Tung, Jhong-He Yu, Tien-Hsien Chang, (Chuan Ku), Jianbo Xie, Deqiang Zhang, Quanzi Li, Ying-Chung Jimmy Lin*. Merit of integrating in situ transcriptomics and anatomical information for cell annotation and lineage construction in single-cell analyses of Populus. GENOME BIOLOGY. 25, 85, 2024-04-03. [JCR] [WOS]
- Gur Hevroni, Flora Vincent, (Chuan Ku), Uri Sheyn, Assaf Vardi*. Daily turnover of active giant virus infection during algal blooms revealed by single-cell transcriptomics. SCIENCE ADVANCES. 9(41), eadf7971, 2023-10-12. [JCR] [WOS]
- Sheng Kao, Chi-Fei Kao, Wen Chang, (Chuan Ku)*. Widespread distribution and evolution of poxviral entry-fusion complex proteins in giant viruses. MICROBIOLOGY SPECTRUM. 11(2), XX, 2023-03-13. [JCR] [WOS]
- Siwat Chang, Ming-Wei Lai, Tzu-Haw Wang, (Chuan Ku)*. Complete genome sequence of Phaeobacter sp. strain G2 isolated from lab culture of the calcifying alga Emiliania huxleyi. Microbiology Resource Announcements. 12(1), e01067-22, 2023-01-27. [JCR] [WOS]
- Chia-Chun Tung, Shang-Che Kuo, Chia-Ling Yang, Jhong-He Yu, Chia-En Huang, Pin-Chien Liou, Ying-Hsuan Sun, Peng Shuai, Jung-Chen Su, (Chuan Ku)*, Ying-Chung Jimmy Lin*. Single-cell transcriptomics unveils xylem cell development and evolution. GENOME BIOLOGY. 24, 3, 2023-01-09. [JCR] [WOS]
- Tzu-Tong Kao, Tzu-Haw Wang, (Chuan Ku)*. Rampant nuclear-mitochondrial-plastid phylogenomic discordance in globally distributed calcifying microalgae. NEW PHYTOLOGIST. 235, 1394-1408, 2022-07-14. [JCR] [WOS]
- Tsu-Wang Sun, (Chuan Ku)*. Unraveling Gene Content Variation Across Eukaryotic Giant Viruses Based on Network Analyses and Host Associations. Virus Evolution. 7(2), veab081, 2021-12-01. [JCR] [WOS]
- (Chuan Ku)*. Giant virus-eukaryote interactions as ecological and evolutionary driving forces. MSYSTEMS. 6(4), e00737-21, 2021-08-24. [JCR] [WOS]
- Tsu-Wang Sun, Chia-Ling Yang, Tzu-Tong Kao, Tzu-Haw Wang, Ming-Wei Lai, (Chuan Ku)*. Host Range and Coding Potential of Eukaryotic Giant Viruses. VIRUSES-BASEL. 12(11), 1337, 2020-11-21. [JCR] [WOS]
- (Chuan Ku)*, Tsu-Wang Sun. Did giant and large dsDNA viruses originate before their eukaryotic hosts?. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 117(6), 2747-2748, 2020-02-11. [JCR] [WOS]
- (Chuan Ku)*, Arnau Sebé-Pedrós*. Using single-cell transcriptomics to understand functional states and interactions in microbial eukaryotes. Philosophical Transactions of the Royal Society B-Biological Sciences. 374(1786), 20190098, 2019-11-25. [JCR] [WOS]
- (Ku Chuan)*, Martin William F. A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule. BMC Biology. 14(1), 2016-10. [JCR] [WOS]
- Ku Chuan, Lo Wen-Sui, Kuo Chih-Horng. Molecular evolution of the actin-like MreB protein gene family in wall-less bacteria. Biochemical and Biophysical Research Communications. 446(4), 927-932, 2014-04. [JCR] [WOS]
- Ku C., Lo W.-S., Chen L.-L., Kuo C.-H. Complete Genome Sequence of Spiroplasma apis B31T (ATCC 33834), a Bacterium Associated with May Disease of Honeybees (Apis mellifera). Genome Announcements. 2(1), 2014. [JCR] [WOS]
- Chang Tean-Hsu, Lo Wen-Sui, Ku Chuan, Chen Ling-Ling, Kuo Chih-Horng. Molecular Evolution of the Substrate Utilization Strategies and Putative Virulence Factors in Mosquito-Associated Spiroplasma Species. Genome Biology and Evolution. 6(3),500-509, 2014. [JCR] [WOS]
- Ku Chuan, Lo Wen-Sui, Chen Ling-Ling, Kuo Chih-Horng. Complete Genomes of Two Dipteran-Associated Spiroplasmas Provided Insights into the Origin, Dynamics, and Impacts of Viral Invasion in Spiroplasma. Genome Biology and Evolution. 5(6),1151-1164, 2013-06. [JCR] [WOS]
- Ku Chuan, Chung Wan-Chia, Chen Ling-Ling, Kuo Chih-Horng. The Complete Plastid Genome Sequence of Madagascar Periwinkle Catharanthus roseus (L.) G. Don: Plastid Genome Evolution, Molecular Marker Identification, and Phylogenetic Implications in Asterids. PLoS ONE. 8(6), e68518, 2013-06. [JCR] [WOS]
- Ku C, Hu JM, Kuo CH. Complete plastid genome sequence of the basal asterid Ardisia polysticta Miq. and comparative analyses of asterid plastid genomes. PloS one. 8(4), e62548, 2013-04. [JCR] [WOS]
- Lo Wen-Sui, Ku Chuan, Chen Ling-Ling, Chang Tean-Hsu, Kuo Chih-Horng. Comparison of Metabolic Capacities and Inference of Gene Content Evolution in Mosquito-Associated Spiroplasma diminutum and S. taiwanense. Genome Biology and Evolution. 5(8),1512-1523, 2013. [JCR] [WOS]
- Ku Chuan, Lo Wen-Sui, Kuo Chih-Horng. Horizontal transfer of potential mobile units in phytoplasmas. Mobile Genetic Elements. 3(5) e26145, 2013. [JCR] [WOS]