Bioinformatics

Genome Browser

  • NCBI
    The main bioinformatics database in USA, providing data retrieval systems and computational resources for biological data
  • UCSC
    This site contains the reference sequence and working draft assemblies for a large collection of genomes
  • DDBJ
    DNA Data Bank of Japan is the nucleotide sequence data bank with many kinds of analysis tools

SNP Information

  • Affymetrix NetAffix Analysis Center
    The NetAffx™ Analysis Center enables researchers to correlate their GeneChip® array results with array design and annotation information

PCR Primer Design

  • PDA
    An online primer-design tool develped by NHRI
  • In-Silico PCR
    In-Silico PCR searches a sequence database with a pair of PCR primers, using an indexing strategy for fast performance

Bioinfomatic tools and databases

  • HapMap
    The International HapMap Project is a partnership of scientists to develop a public resource to describe the common patterns of human DNA sequence variation that will help researchers find genes associated with human disease and response to pharmaceuticals
  • GenePipe
    A high performance bioinformatics pipeline for large-scale human genomic variation studies supported by IBMS, Academia Sinica. There are a number of sub-projects which include: Affyrmation, SeqU, QCeq, Genominer, fastSNP, and PrimerZ
  • String
    A database of known and predicted protein interactions.The interactions include direct (physical) and indirect (functional) associations
  • MGI
    The international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of human health and disease
  • KEGG pathway database
    A integrated database resource consisting of 16 main databases, broadly categorized into systems information, genomic information, and chemical informationand, also the associated bioinformatics technologies are being developed both for basic research and practical applications

Nucleotide databases and analysis tools

Protein databases and analysis tools

Other databases and analysis tools

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