Research Findings
Journal 33
- Kanno T, Chiou P, Wu MT, Lin WD, Matzke A, Matzke M. A GFP splicing reporter in a coilin mutant background reveals links between alternative splicing, siRNAs, and coilin function in Arabidopsis thaliana. G3 (Bethesda, Md.). 13(10), jkad175, 2023. [JCR] [WOS]
- Radjacommare R, Lin SY, Usharani R, Lin WD, Jauh GY, Schmidt W, Fu H. The Arabidopsis Deubiquitylase OTU5 Suppresses Flowering by Histone Modification-Mediated Activation of the Major Flowering Repressors FLC, MAF4, and MAF5. International journal of molecular sciences. 24(7), 6176, 2023. [JCR] [WOS]
- Huang CK, Lin WD, Wu SH. An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development. Genome biology. 23(1), 50, 2022. [JCR] [WOS]
- Lin WC, Chen YH, Gu SY, Shen HL, Huang KC, Lin WD, Chang MC, Chang IF, Hong CY, Cheng WH. CFM6 is an Essential CRM Protein Required for the Splicing of nad5 Transcript in Arabidopsis Mitochondria. Plant & cell physiology. 63(2), 217–233, 2022. [JCR] [WOS]
- Hsieh EJ, Lin WD, Schmidt W. Genomically Hardwired Regulation of Gene Activity Orchestrates Cellular Iron Homeostasis in Arabidopsis. RNA biology. 19(1), 143-161, 2022. [JCR] [WOS]
- Pan ZJ, Nien YC, Shih YA, Chen TY, Lin WD, Kuo WH, Hsu HC, Tu SL, Chen JC, Wang CN. Transcriptomic Analysis Suggests Auxin Regulation in Dorsal-Ventral Petal Asymmetry of Wild Progenitor Sinningia speciosa. International journal of molecular sciences. 23(4), 2073, 2022. [JCR] [WOS]
- Lin MC, Kuo HW, Kao MR, Lin WD, Li CW, Hung KS, Yang SC, Yu SM, Ho TD. From simple and specific zymographic detections to the annotation of a fungus Daldinia caldariorum D263 that encodes a wide range of highly bioactive cellulolytic enzymes. Biotechnology for biofuels. 14(1), 120, 2021. [JCR] [WOS]
- Matzke AJM, Lin WD, Matzke M. Evidence That Ion-Based Signaling Initiating at the Cell Surface Can Potentially Influence Chromatin Dynamics and Chromatin-Bound Proteins in the Nucleus. Frontiers in plant science. 10, 1267, 2019-10. [JCR] [WOS]
- Chong GL, Foo MH, Lin WD, Wong MM, Verslues PE. Highly ABA-Induced 1 (HAI1)-Interacting protein HIN1 and drought acclimation-enhanced splicing efficiency at intron retention sites. Proceedings of the National Academy of Sciences of the United States of America. 116(44), 22376-22385, 2019-10. [JCR] [WOS]
- Wong MM, Bhaskara GB, Wen TN, Lin WD, Nguyen TT, Chong GL, Verslues PE. Phosphoproteomics of Arabidopsis Highly ABA-Induced1 identifies AT-Hook-Like10 phosphorylation required for stress growth regulation. Proceedings of the National Academy of Sciences of the United States of America. 116(6), 2354-2363, 2019-02. [JCR] [WOS]
- Kanno T, Venhuizen P, Wen TN, Lin WD, Chiou P, Kalyna M, Matzke AJM, Matzke M. PRP4KA, a Putative Spliceosomal Protein Kinase, Is Important for Alternative Splicing and Development in Arabidopsis thaliana. Genetics. 210(4), 1267-1285, 2018-12. [JCR] [WOS]
- Kanno T, Lin WD, Chang CL, Matzke M, Matzke AJM. A Genetic Screen Identifies PRP18a, a Putative Second Step Splicing Factor Important for Alternative Splicing and a Normal Phenotype in Arabidopsis thaliana. G3-Genes Genomes Genetics. 8(4), 1367-1377, 2018. [JCR] [WOS]
- Kanno T, Lin WD, Fu JL, Chang CL, Matzke AJM, Matzke M. A Genetic Screen for Pre-mRNA Splicing Mutants of Arabidopsis thaliana Identifies Putative U1 snRNP Components RBM25 and PRP39a. Genetics. 207(4), 1347-1359, 2017. [JCR] [WOS]
- Kanno T, Lin WD, Fu JL, Matzke AJM, Matzke M. A genetic screen implicates a CWC16/Yju2/CCDC130 protein and SMU1 in alternative splicing in Arabidopsis thaliana. RNA. 23(7), 1068-1079, 2017. [JCR] [WOS]
- Salazar-Henao JE, Lin WD, Schmidt W. Discriminative gene co-expression network analysis uncovers novel modules involved in the formation of phosphate deficiency-induced root hairs in Arabidopsis. Scientific reports. 6, 26820, 2016. [JCR] [WOS]
- Kanno T, Lin WD, Fu JL, Wu MT, Yang HW, Lin SS, Matzke AJ, Matzke M. Identification of Coilin Mutants in a Screen for Enhanced Expression of an Alternatively Spliced GFP Reporter Gene in Arabidopsis thaliana. Genetics. 203(4), 1709-1720, 2016. [JCR] [WOS]
- Shinde S, Villamor JG, Lin W, Sharma S, Verslues PE. Proline Coordination with Fatty Acid Synthesis and Redox Metabolism of Chloroplast and Mitochondria. Plant physiology. 172(2), 1074-1088, 2016. [JCR] [WOS]
- Sasaki T, Kanno T, Liang SC, Chen PY, Liao WW, Lin WD, Matzke AJ, Matzke M. An Rtf2 Domain-Containing Protein Influences Pre-mRNA Splicing and Is Essential for Embryonic Development in Arabidopsis thaliana. Genetics. 200(2), 523-535, 2015. [JCR] [WOS]
- Luo M, Tai R, Yu CW, Yang S, Chen CY, Lin WD, Schmidt W, Wu K. Regulation of flowering time by the histone deacetylase HDA5 in Arabidopsis. The Plant journal : for cell and molecular biology. 82(6), 925-936, 2015. [JCR] [WOS]
- Chang CY, Lin WD, Tu SL. Genome-Wide Analysis of Heat-Sensitive Alternative Splicing in Physcomitrella patens. Plant physiology. 165(2), 826-840, 2014. [JCR] [WOS]
- Wu HP, Su YS, Chen HC, Chen YR, Wu CC, Lin WD, Tu SL. Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens. Genome biology. 15(1), R10, 2014. [JCR] [WOS]
- Sharma S, Lin W, Villamor JG, Verslues PE. Divergent low water potential response in Arabidopsis thaliana accessions Landsberg erecta and Shahdara. Plant Cell and Environment. 36(5), 994-1008, 2013. [JCR] [WOS]
- Li W, Lin WD, Ray P, Lan P, Schmidt W. Genome-wide detection of condition-sensitive alternative splicing in Arabidopsis roots. Plant physiology. 162(3), 1750-1763, 2013. [JCR] [WOS]
- Lan P, Li W, Lin WD, Santi S, Schmidt W. Mapping gene activity of Arabidopsis root hairs. Genome biology. 14(6), R67, 2013. [JCR] [WOS]
- Rodriguez-Celma J, Lin WD, Fu GM, Abadia J, Lopez-Millan AF, Schmidt W. Mutually exclusive alterations in secondary metabolism are critical for the uptake of insoluble iron compounds by arabidopsis and Medicago truncatula. Plant physiology. 162(3), 1473-1485, 2013. [JCR] [WOS]
- Chen YT, Shen CH, Lin WD, Chu HA, Huang BL, Kuo CI, Yeh KW, Huang LC, Chang IF. Small RNAs of Sequoia sempervirens during rejuvenation and phase change. Plant Biology. 15(1), 27-36, 2013. [JCR] [WOS]
- Liu MJ, Wu SH, Wu JF, Lin WD, Wu YC, Tsai TY, Tsai HL, Wu SH. Translational landscape of photomorphogenic Arabidopsis. The Plant cell. 25(10), 3699-3710, 2013. [JCR] [WOS]
- Chen YC, Chen YC, Lin WD, Hsiao CD, Chiu HW, Ho JM. Bio301: A Web-Based EST Annotation Pipeline That Facilitates Functional Comparison Studies. ISRN bioinformatics. 2012, 139842, 2012. [JCR]
- Chen CC, Lin WD, Chang YJ, Chen CL, Ho JM. Enhancing de novo transcriptome assembly by incorporating multiple overlap sizes. ISRN bioinformatics. 2012, 816402, 2012. [JCR]
- Kesari R, Lasky JR, Villamor JG, Des Marais DL, Chen YJ, Liu TW, Lin W, Juenger TE, Verslues PE. Intron-mediated alternative splicing of Arabidopsis P5CS1 and its association with natural variation in proline and climate adaptation. Proceedings of the National Academy of Sciences of the United States of America. 109(23), 9197-9202, 2012. [JCR] [WOS]
- Lin WD, Liao YY, Yang TJ, Pan CY, Buckhout TJ, Schmidt W. Coexpression-based clustering of Arabidopsis root genes predicts functional modules in early phosphate deficiency signaling. Plant physiology. 155(3), 1383-1402, 2011. [JCR] [WOS]
- Lan P, Li W, Wen TN, Shiau JY, Wu YC, Lin W, Schmidt W. iTRAQ protein profile analysis of Arabidopsis roots reveals new aspects critical for iron homeostasis. Plant physiology. 155(2), 821-834, 2011. [JCR] [WOS]
- Yang TJ, Lin WD, Schmidt W. Transcriptional profiling of the Arabidopsis iron deficiency response reveals conserved transition metal homeostasis networks. Plant physiology. 152(4), 2130-2141, 2010. [JCR] [WOS]