Academia Sinica Life Science Library -- Publications

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Publications

Inst. of Plant and Microbial Biology - 涂世隆 Tu, Shih-Long

Journal 28

Tang H, Lu KJ, Zhang Y, Cheng YL, (Tu SL), Friml J*. Divergence of trafficking and polarization mechanisms for PIN auxin transporters during land plant evolution. PLANT COMMUNICATIONS. 5(1), 100669, 2024-01-08. [JCR]　[WOS]
Chong, G.-L. and Tu, S.-L.*. RNA-seq analysis of alternative pre-mRNA splicing regulation mediated by photoreceptors in Physcomitrium patens. METHODS IN ENZYMOLOGY. 683, 227-241, 2023. [JCR]　[WOS]
Zhang R, Kuo R, Coulter M, Calixto CPG, Entizne JC, Guo W, Marquez Y, Milne L, Riegler S, Matsui A, Tanaka M, Harvey S, Gao Y, Wiessner-Kroh T, Paniagua A, Crespi M, Denby K, Hur AB, Huq E, Jantsch M, Jarmolowski A, Koester T, Laubinger S, Li QQ, Gu L, Seki M, Staiger D, Sunkar R, Szweykowska-Kulinska Z, (Tu SL), Wachter A, Waugh R, Xiong L, Zhang XN, Conesa A, Reddy ASN, Barta A, Kalyna M, Brown JWS. A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. GENOME BIOLOGY. 23(1), 149, 2022. [JCR]　[WOS]
Liu WY, Yu CP, Chang CK, Chen HJ, Li MY, Chen YH, Shiu SH, Ku MSB, (Tu SL*), Lu MJ*, Li WH*. Regulators of early maize leaf development inferred from transcriptomes of laser capture microdissection (LCM)-isolated embryonic leaf cells. Proceedings of the National Academy of Sciences of the United States of America. 119(35), e2208795119, 2022. [JCR]　[WOS]
Chang P, (Tu SL*). Reply: The spliceosomal component RBP45d regulates pre-mRNA splicing and gene silencing for flowering time control in Arabidopsis. The Plant cell. 34(11), 4141-4142, 2022. [JCR]　[WOS]
Pan ZJ, Nien YC, Shih YA, Chen TY, Lin WD, Kuo WH, Hsu HC, (Tu SL), Chen JC*, Wang CN*. Transcriptomic Analysis Suggests Auxin Regulation in Dorsal-Ventral Petal Asymmetry of Wild Progenitor Sinningia speciosa. International journal of molecular sciences. 23(4), 2073, 2022. [JCR]　[WOS]
Wang CC, Hsieh HY, Hsieh HL, Tu SL. The Physcomitrella patens chromatin adaptor PpMRG1 interacts with H3K36me3 and regulates light-responsive alternative splicing. Plant physiology. 185(3), 1229-1241, 2021. [JCR]　[WOS]
Chang P, Hsieh HY, Tu SL. The U1 snRNP component RBP45d regulates temperature-responsive flowering in Arabidopsis. The Plant cell. DOI, 10.1093/plcell/koab2, 2021. [JCR]　[WOS]
Petrillo E, Kalyna M, Mandadi KK, Tu SL, Simpson CG. Editorial: Alternative Splicing Regulation in Plants. Frontiers in plant science. 11, 913, 2020. [JCR]　[WOS]
Lin BY, Shih CJ, Hsieh HY, Chen HC, Tu SL. Phytochrome Coordinates with a hnRNP to Regulate Alternative Splicing via an Exonic Splicing Silencer. Plant physiology. 182(1), 243-254, 2020. [JCR]　[WOS]
Chang YM, Lin HH, Liu WY, Yu CP, Chen HJ, Wartini PP, Kao YY, Wu YH, Lin JJ, Lu MJ, (Tu SL), Wu SH, Shiu SH, Ku MSB*, Li WH*. Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes. Proceedings of the National Academy of Sciences of the United States of America. 116(8), 3091-3099, 2019-02. [JCR]　[WOS]
Shih CJ, Chen HW, Hsieh HY, Lai YH, Chiu FY, Chen YR, (Tu SL*). Heterogeneous Nuclear Ribonucleoprotein H1 Coordinates with Phytochrome and the U1 snRNP Complex to Regulate Alternative Splicing in Physcomitrella patens. The Plant Cell. 31(10), 2510-2524, 2019. [JCR]　[WOS]
Cheng YL and (Tu SL*). Alternative Splicing and Crosstalk with Light Signaling. Plant and Cell Physiology. 59, 1104-1110, 2018-06-01. [JCR]　[WOS]
Huang CF, Yu CP, Wu YH, Lu MJ, (Tu SL), Wu SH, Shiu SH, Ku MSB, Li WH. Elevated auxin biosynthesis and transport underlie high vein density in C4 leaves. Proceedings of the National Academy of Sciences of the United States of America. 114(33), E6884-E6891, 2017. [JCR]　[WOS]
Huang, CF., Chang, YM., Lin, JJ., Yu, CP., Lin, HH., Liu, WY., Yeh, S., (Tu, SL.), Wu, SH., Ku, MS.*, and Li, WH.*. Insights into the regulation of C4 leaf development from comparative transcriptomic analysis. CURRENT OPINION IN PLANT BIOLOGY. 30, 1-10, 2016. [JCR]　[WOS]
Chang CY, Lin WD, (Tu SL)*. Genome-wide analysis of heat-sensitive alternative splicing in Physcomitrella patens. PLANT PHYSIOLOGY. 165, 826-840, 2014. [JCR]　[WOS]
Wu HP, Su YS, Chen HC, Chen YR, Wu CC, Lin WD, (Tu SL)*. Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens. Genome Biology. 15, R10, 2014. [JCR]　[WOS]
Chen, YR., Su, Ys., (Tu, SL.*). Distinct phytochrome actions in non-vascular plants revealed by targeted inactivation of phytobilin biosynthesis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 109, 8310-8315, 2012-05. [JCR]　[WOS]
Chiu, FY., Chen YR., (Tu, SL.*). Electrostatic interaction of phytochromobilin synthase and ferredoxin for biosynthesis of phytochrome chromophore. JOURNAL OF BIOLOGICAL CHEMISTRY. 28, 5056-5065, 2010-02. [JCR]　[WOS]
(Tu, SL.*), Chen, HC., Ku, LW. Mechanistic studies of the phytochromobilin synthase HY2 from Arabidopsis. JOURNAL OF BIOLOGICAL CHEMISTRY. 283, 27555-28564, 2008. [JCR]　[WOS]
Tu, SL., Rockwell, NC., Fisher, AJ. and Lagarias, JC. Insight into the radical mechanism of phycocyanobilin:ferredoxin oxidoreductase (PcyA) revealed by X-ray crystallography and biochemical measurements. Biochemistry. 46, 1484 -1494, 2007. [JCR]　[WOS]
Tu SL, Sughrue W, Britt RD and Lagarias JC. A conserved histidine-aspartate pair is required for exovinyl reduction of biliverdin by a cyanobacterial phycocyanobilin:ferredoxin oxidoreductase. J Biol Chem. 281, 3127-3136, 2006. [JCR]　[WOS]
Tu SL, Gunn A, Toney MD, Britt RD and Lagarias JC. Biliverdin reduction by cyanobacterial phycocyanobilin:ferredoxin oxidoreductase (PcyA) proceeds via linear tetrapyrrole radical intermediates. J Am Chem Soc. 126, 8682-8693, 2004. [JCR]　[WOS]
Tu SL, Chen LJ, Smith MD, Su YS, Schnell DJ and Li HM. Import pathways of chloroplast interior proteins and the outer-membrane protein OEP14 converge at Toc75. Plant Cell. 16, 2078-2088, 2004. [JCR]　[WOS]
Chou ML, Fitzpatrick LM, Tu SL, Budziszewski G, Potter-Lewis S, Akita M, Levin JZ, Keegstra K and Li HM. Tic40, a membrane-anchored co-chaperone homolog in the chloroplast protein translocon. EMBO J. 22, 2970-2980, 2003. [JCR]　[WOS]
Sun YJ, Forouhar F, Li Hm HM, Tu SL, Yeh YH, Kao S, Shr HL, Chou CC, Chen C and Hsiao CD. Crystal structure of pea Toc34, a novel GTPase of the chloroplast protein translocon. Nature Structural Biology. 9, 95-100, 2002. [JCR]　[WOS]
Tu SL and Li HM. Insertion of OEP14 into the outer envelope membrane is mediated by proteinaceous components of chloroplasts. Plant Cell. 12, 1951-1960, 2000. [JCR]　[WOS]
Tsai LY, Tu SL and Li HM. Insertion of atToc34 into the chloroplastic outer membrane is assisted by at least two proteinaceous components in the import system. JOURNAL OF BIOLOGICAL CHEMISTRY. 274, 18735-18740, 1999. [JCR]　[WOS]

Book 1

Tu, SL and Lagarias, JC Handbook of Photosensory Receptors. 121-149, 2005.