生命組研究成果
期刊 26
- Hsin-Tung Lai, Ming-Wei Lai, Tzu-Haw Wang, Haojia Ren, (Chuan Ku)*. Mitochondrial genome reduction and accelerated evolution in planktonic foraminiferans. bioRxiv. 10.1101/2025.08.28.672841, 10.1101/2025.08.28.672841, 2025-08.
- Pin-Yi Song, Chia-En Tsai, Yung-Chih Chen, Yu-Wen Huang, Po-Pang Chen, Tzu-Haw Wang, Chao-Yuan Hu, Po-Yin Chen, (Chuan Ku), Kuo-Chiang Hsia, See-Yeun Ting. An interbacterial cysteine protease toxin inhibits cell growth by targeting type II DNA topoisomerases GyrB and ParE. PLOS BIOLOGY. 23(5), e3003208, 2025-05-13. [WOS]
- Avia Mizrachi, Mai Sadeh, Shifra Ben-Dor, Orly Dym, (Chuan Ku), Ester Feldmesser, Amichai Zarfin, John K. Brunson, Andrew E. Allen, Robert E. Jinkerson, Daniella Schatz, Assaf Vardi. Cathepsin X is a conserved cell death protein involved in algal response to environmental stress. CURRENT BIOLOGY. 35, 9-1-17, 2025-04-14. [WOS]
- Laurie Bousquet, Shai Fainsod, Johan Decelle, Omer Murik, Fabien Chevalier, Benoit Gallet, Rachel Templin, Yannick Schwab, Yoav Avrahami, Gil Koplovitz, (Chuan Ku), Miguel J. Frada. Life cycle and morphogenetic differentiation in heteromorphic cell types of a cosmopolitan marine microalga. NEW PHYTOLOGIST. 245(5), 1969-1984, 2025-03. [WOS]
- Hwee Sze Tee, (Chuan Ku). Host-calibrated time tree caps the age of giant viruses. MOLECULAR BIOLOGY AND EVOLUTION. 42(2), 1-11, 2025-02-20. [JCR] [WOS]
- Tzu-Tong Kao, Ming-Wei Lai, Tzu-Haw Wang, Chia-Ling Yang, Miguel Frada, (Chuan Ku). Haplotype-aware multiomics unveils the regulatory basis of haplodiplontic life-cycle differentiation in a cosmopolitan marine alga. bioRxiv. 2024, doi.org/10.1101/2024.05.26.595999, 2024-06.
- Ying-Lan Chen*, Jo-Wei Allison Hsieh, Shang-Che Kuo, Chung-Ting Kao, Chia-Chun Tung, Jhong-He Yu, Tien-Hsien Chang, (Chuan Ku), Jianbo Xie, Deqiang Zhang, Quanzi Li, Ying-Chung Jimmy Lin*. Merit of integrating in situ transcriptomics and anatomical information for cell annotation and lineage construction in single-cell analyses of Populus. GENOME BIOLOGY. 25, 85, 2024-04-03. [WOS]
- Gur Hevroni, Flora Vincent, (Chuan Ku), Uri Sheyn, Assaf Vardi*. Daily turnover of active giant virus infection during algal blooms revealed by single-cell transcriptomics. SCIENCE ADVANCES. 9(41), eadf7971, 2023-10-12. [JCR] [WOS]
- Sheng Kao, Chi-Fei Kao, Wen Chang, (Chuan Ku)*. Widespread distribution and evolution of poxviral entry-fusion complex proteins in giant viruses. MICROBIOLOGY SPECTRUM. 11(2), XX, 2023-03-13. [JCR] [WOS]
- Siwat Chang, Ming-Wei Lai, Tzu-Haw Wang, (Chuan Ku)*. Complete genome sequence of Phaeobacter sp. strain G2 isolated from lab culture of the calcifying alga Emiliania huxleyi. Microbiology Resource Announcements. 12(1), e01067-22, 2023-01-27. [JCR] [WOS]
- Chia-Chun Tung, Shang-Che Kuo, Chia-Ling Yang, Jhong-He Yu, Chia-En Huang, Pin-Chien Liou, Ying-Hsuan Sun, Peng Shuai, Jung-Chen Su, (Chuan Ku)*, Ying-Chung Jimmy Lin*. Single-cell transcriptomics unveils xylem cell development and evolution. GENOME BIOLOGY. 24, 3, 2023-01-09. [JCR] [WOS]
- Tzu-Tong Kao, Tzu-Haw Wang, (Chuan Ku)*. Rampant nuclear-mitochondrial-plastid phylogenomic discordance in globally distributed calcifying microalgae. NEW PHYTOLOGIST. 235, 1394-1408, 2022-07-14. [JCR] [WOS]
- Tsu-Wang Sun, (Chuan Ku)*. Unraveling Gene Content Variation Across Eukaryotic Giant Viruses Based on Network Analyses and Host Associations. Virus Evolution. 7(2), veab081, 2021-12-01. [JCR] [WOS]
- (Chuan Ku)*. Giant virus-eukaryote interactions as ecological and evolutionary driving forces. MSYSTEMS. 6(4), e00737-21, 2021-08-24. [JCR] [WOS]
- Tsu-Wang Sun, Chia-Ling Yang, Tzu-Tong Kao, Tzu-Haw Wang, Ming-Wei Lai, (Chuan Ku)*. Host Range and Coding Potential of Eukaryotic Giant Viruses. VIRUSES-BASEL. 12(11), 1337, 2020-11-21. [JCR] [WOS]
- (Chuan Ku)*, Tsu-Wang Sun. Did giant and large dsDNA viruses originate before their eukaryotic hosts?. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 117(6), 2747-2748, 2020-02-11. [JCR] [WOS]
- (Chuan Ku)*, Arnau Sebé-Pedrós*. Using single-cell transcriptomics to understand functional states and interactions in microbial eukaryotes. Philosophical Transactions of the Royal Society B-Biological Sciences. 374(1786), 20190098, 2019-11-25. [JCR] [WOS]
- (Ku Chuan)*, Martin William F. A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule. BMC Biology. 14(1), 2016-10. [JCR] [WOS]
- Ku Chuan, Lo Wen-Sui, Kuo Chih-Horng. Molecular evolution of the actin-like MreB protein gene family in wall-less bacteria. Biochemical and Biophysical Research Communications. 446(4), 927-932, 2014-04. [JCR] [WOS]
- Ku C., Lo W.-S., Chen L.-L., Kuo C.-H. Complete Genome Sequence of Spiroplasma apis B31T (ATCC 33834), a Bacterium Associated with May Disease of Honeybees (Apis mellifera). Genome Announcements. 2(1), 2014. [JCR]
- Chang Tean-Hsu, Lo Wen-Sui, Ku Chuan, Chen Ling-Ling, Kuo Chih-Horng. Molecular Evolution of the Substrate Utilization Strategies and Putative Virulence Factors in Mosquito-Associated Spiroplasma Species. Genome Biology and Evolution. 6(3),500-509, 2014. [JCR] [WOS]
- Ku Chuan, Lo Wen-Sui, Chen Ling-Ling, Kuo Chih-Horng. Complete Genomes of Two Dipteran-Associated Spiroplasmas Provided Insights into the Origin, Dynamics, and Impacts of Viral Invasion in Spiroplasma. Genome Biology and Evolution. 5(6),1151-1164, 2013-06. [JCR] [WOS]
- Ku Chuan, Chung Wan-Chia, Chen Ling-Ling, Kuo Chih-Horng. The Complete Plastid Genome Sequence of Madagascar Periwinkle Catharanthus roseus (L.) G. Don: Plastid Genome Evolution, Molecular Marker Identification, and Phylogenetic Implications in Asterids. PLoS ONE. 8(6), e68518, 2013-06. [JCR] [WOS]
- Ku C, Hu JM, Kuo CH. Complete plastid genome sequence of the basal asterid Ardisia polysticta Miq. and comparative analyses of asterid plastid genomes. PloS one. 8(4), e62548, 2013-04. [JCR] [WOS]
- Lo Wen-Sui, Ku Chuan, Chen Ling-Ling, Chang Tean-Hsu, Kuo Chih-Horng. Comparison of Metabolic Capacities and Inference of Gene Content Evolution in Mosquito-Associated Spiroplasma diminutum and S. taiwanense. Genome Biology and Evolution. 5(8),1512-1523, 2013. [JCR] [WOS]
- Ku Chuan, Lo Wen-Sui, Kuo Chih-Horng. Horizontal transfer of potential mobile units in phytoplasmas. Mobile Genetic Elements. 3(5) e26145, 2013.